Stem-loop pal-mir-18b

Accession

MI0032652

Description

Pteropus alecto pal-mir-18b precursor miRNA

Sequence

UAAGGUGCAUCUAGUGCAGUUagugaagcagcuuagaaucUACUGCCCUAAAUGCCCCUUCU
.((((.((((.(((.(((((.((................))))))).))).)))).))))..

Structure

-U    U    C   U     U  ugaagca 
  AAGG GCAU UAG GCAGU ag       g
  |||| |||| ||| ||||| ||        
  UUCC CGUA AUC CGUCA Uc       c
UC    C    A   C     -  uaagauu 

Annotation confidence Not enough data

Genome context

KB031071.1: 682580-682641 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from pal-mir-18b

Mature pal-miR-18b-5p

• Accession: MIMAT0040400
• Description: Pteropus alecto pal-miR-18b-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGUU - 21
• Evidence: experimental ; Illumina [1]

Mature pal-miR-18b-3p

• Accession: MIMAT0040401
• Description: Pteropus alecto pal-miR-18b-3p mature miRNA
• Sequence: 41 - UACUGCCCUAAAUGCCCCUUCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682