Stem-loop pal-mir-449c

Accession

MI0032655

Description

Pteropus alecto pal-mir-449c precursor miRNA

Sequence

AGGCAGUACAUUGCUAGCUGGCUGUuauaauuucaacAGUGGCUAGUUGUGCUCCCCU
.((.((((((..((((((..((((((........)))))).)))))))))))).))..

Structure

-A  C      UU      UG      aua 
  GG AGUACA  GCUAGC  GCUGUu   a
  || ||||||  ||||||  ||||||    
  CC UCGUGU  UGAUCG  UGAcaa   u
UC  C      --      -G      cuu 

Annotation confidence Not enough data

Genome context

KB030662.1: 5391003-5391060 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-449c

Mature pal-miR-449c-5p

• Accession: MIMAT0040406
• Description: Pteropus alecto pal-miR-449c-5p mature miRNA
• Sequence: 1 - AGGCAGUACAUUGCUAGCUGGCUGU - 25
• Evidence: experimental ; Illumina [1]

Mature pal-miR-449c-3p

• Accession: MIMAT0040407
• Description: Pteropus alecto pal-miR-449c-3p mature miRNA
• Sequence: 38 - AGUGGCUAGUUGUGCUCCCCU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682