Stem-loop pal-mir-377

Accession

MI0032658

Description

Pteropus alecto pal-mir-377 precursor miRNA

Literature search

1 open access papers mention pal-mir-377
(2 sentences)

Sequence

AGAGGUCGCCCUUGGUGAAUUCgcuuuauuuauguugaAUCACACAAAGGCAACUUUUGU
((((((.(((.(((((((.(((((.........).)))))))).))).))).))))))..

Structure

--      C   C   -    A    - uuu 
  AGAGGU GCC UUG GUGA UUCg c   a
  |||||| ||| ||| |||| |||| |   u
  UUUUCA CGG AAC CACU Aagu g   u
UG      A   A   A    -    u uau 

Annotation confidence Not enough data

Genome context

KB031153.1: 22104473-22104532 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from pal-mir-377

Mature pal-miR-377-5p

• Accession: MIMAT0040412
• Description: Pteropus alecto pal-miR-377-5p mature miRNA
• Sequence: 1 - AGAGGUCGCCCUUGGUGAAUUC - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-377-3p

• Accession: MIMAT0040413
• Description: Pteropus alecto pal-miR-377-3p mature miRNA
• Sequence: 39 - AUCACACAAAGGCAACUUUUGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682