Stem-loop gma-MIR10187

Accession

MI0032952

Description

Glycine max gma-MIR10187 precursor miRNA

Sequence

uuuugcaggucaaguugcaauuuuauuuaauggguccaauggauucucagaaaacauuaauaaagccaaaucagcuguaacauuauuuucuuuguugcuugcauuauuaauugacagaguuauaaguaauacacuuucaaguuuuuuuuguucgcaaauuauuuaaaaaacaucucaaucauaaaauaccguacaaucauuaagcucuuaaugacuaaaauuaccagaaaacuucuuccuuucuucCGAGGAUAAUUGUUGGAACCAaaugcauucc
..((((((......))))))..........(((.((((((((((((((.(((...........(((.......)))((((((..........)))))).(((..((((...(((.((((((.((((((((.......((((.....)))).......))))))))...))).)))...)))...))))..)))...(((((((....)))))))...........((((...)))).......))).))))))..)))))))).)))..........

Structure

uuuugcaggucaaguugcaauuuuauuuaa   g        --      a   ---aacauuaauaaagccaaaucagcuguaacauuauuuucuuuguugcu   au    aau   --c   -   --a        acacuuu    u 
                              ugg uccaaugg  auucuc gaa                                                  ugc  uauu   uga   aga guu   uaaguaau       caag u
                              ||| ||||||||  |||||| |||                                                  |||  ||||   |||   ||| |||   ||||||||       |||| u
                              ACC AGGUUGUU  UAGGAG cuu                                                  aug  auaa   acu   ucu caa   auuuauua       guuu u
--------------------ccuuacguaa   A        AA      C   cuuuccuucuucaaaagaccauuaaaaucaguaauucucgaauuacuaac   cc    aau   aac   a   aaa        aacgcuu    u 

Annotation confidence Not enough data

Genome context

chr10: 12584866-12585142 [+]

Mature gma-miR10187

• Accession: MIMAT0040952
• Description: Glycine max gma-miR10187 mature miRNA
• Sequence: 247 - CGAGGAUAAUUGUUGGAACCA - 267
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601