miRBase entry: gma-MIR10188

Stem-loop gma-MIR10188


Accession
MI0032953
Description
Glycine max gma-MIR10188 precursor miRNA


Sequence

647 reads, 13.0 reads per million, 149 experiments
uacaccaggCAGUCCUAAUCUGCAAAAUCAGAuauucaaacccagauucaccauuucauguguuuuuucuuccaccauuuuguuguaguaagacucuauguaccuccuagaacuagaaggcaacgauagagggaguagggguuguguuguggcuagguaagacuaucuuugaaauggugauucuagguuuugaaUCUCUGAUUUUGCAGAUAAGGACUaccugguguc
.((((((((.((((((.(((((((((((((((.(((((((((.(((.(((((((((((...(((((.(((.(((((((....((.((.(....((((((((.(((.(((....))).)))..)).))))))..).)).))...)))..))))..))).)))))......))))))))))).))).)).))))))).))))))))))))))).)))))).)))))))).

Structure
u        C      A               u       -  c   u           ---ugu     u   -u    --   uuug  g  g aaga      -  -a   c   g 
 acaccagg AGUCCU AUCUGCAAAAUCAGA auucaaa cc aga ucaccauuuca      guuuu ucu  ccac  cau    uu ua u    cucuau gu  ccu cua a
 |||||||| |||||| ||||||||||||||| ||||||| || ||| |||||||||||      ||||| |||  ||||  |||    || || |    |||||| ||  ||| |||  
 uguggucc UCAGGA UAGACGUUUUAGUCU Uaaguuu gg ucu agugguaaagu      cagaa gga  ggug  gug    gg au a    gagaua ca  gga gau a
c        a      A               C       u  a   u           uucuau     u   uc    uu   -uug  g  g --gg      g  ac   a   c 


Annotation confidence Low
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Genome context
chr10: 13443795-13444022 [+]

Database links

Mature gma-miR10188-5p

Accession MIMAT0054472
Description Glycine max gma-miR10188-5p mature miRNA
Sequence 10 - CAGUCCUAAUCUGCAAAAUCAGA - 32
Evidence experimental
unknown

Mature gma-miR10188-3p

Accession MIMAT0040953
Description Glycine max gma-miR10188-3p mature miRNA
Sequence 195 - UCUCUGAUUUUGCAGAUAAGGACU - 218
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25465409
    An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
    "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
    "Plant Cell (2014) 26:4584-4601