Stem-loop gma-MIR5030b

Accession

MI0032957

Description

Glycine max gma-MIR5030b precursor miRNA

Sequence

73408 reads, 98.0 reads per million, 177 experiments

gaacuucuuucgauagcuuuguucuucuggaagaaccuucuuccggagaaacuaccggaagaacuUCUUCCGGAUGAACAAUUUGUUCUuccagaaaaaccuucUUCCGGAAGAACAAAGCUACCagaagaaguu
.(((((((((.(.((((((((((((((((((((((..(((((((((........)))))))))....(((.(((.(((((...))))).))).))).....)))))))))))))))))))))).).)))))))))

Structure

g         c a                      ccuucuuccggagaaacuaccggaagaacuUC   C   U     A 
 aacuucuuu g uagcuuuguucuucuggaagaa                                UUC GGA GAACA  
 ||||||||| | ||||||||||||||||||||||                                ||| ||| ||||| U
 uugaagaag C AUCGAAACAAGAAGGCCUUcuu                                aag ccu CUUGU  
-         a C                      ---------------------------ccaaa   a   U     U 

Annotation confidence Low

Genome context

chr12: 36078574-36078708 [+]

Mature gma-miR5030b-5p

• Accession: MIMAT0054475
• Description: Glycine max gma-miR5030b-5p mature miRNA
• Sequence: 66 - UCUUCCGGAUGAACAAUUUGUUCU - 89
• Evidence: experimental ; unknown

Mature gma-miR5030b-3p

• Accession: MIMAT0040957
• Description: Glycine max gma-miR5030b-3p mature miRNA
• Sequence: 105 - UUCCGGAAGAACAAAGCUACC - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601