Stem-loop gma-MIR5770c

Accession

MI0032959

Description

Glycine max gma-MIR5770c precursor miRNA

Literature search

2 open access papers mention gma-MIR5770c
(2 sentences)

Sequence

cuaaaggugaUAGGACUAUGGUUUGGAUUUguuucccaagucuuaacaagauuuauuaugaugaaaguuuccuucuaauucuuuuuugggaaccauuauuggaaaaccaaucaaagugauugcuaaaauucugaaagugcugugaggacuauuugcaggaguuuguguggagauugauuuagauaaccuauuguuggcaagguacauguagauggacaugguauaaaguggcuuaugaaggucuucguauuauuuguucgaagugugguuguuaug
........((((((......(((((((((.((((((((((((((...)))))))...((((((...((((((...............)))))))))))).((((...((((((...))))))......)))).(((.(.(((((((.....))))))).).)))..).)))))).)))))))))..))))))..((((((..(((((.....((((((....(((....(((((....)))))....)))....))))))..))))).))))))..

Structure

----------------------------------------------------------------------------cuaaaggu      ACUAUG         U      - aagucuuaacaagauuuauuaugaugaaaguuuccuucuaauucuuuuuugggaaccauuauu 
                                                                                    gaUAGG      GUUUGGAUU guuucc c                                                               g
                                                                                    ||||||      ||||||||| |||||| |                                                               g
                                                                                    uuaucc      uagauuuag uagagg g                                                               a
guauuguuggugugaagcuuguuuauuaugcuucuggaaguauucggugaaauaugguacagguagauguacauggaacgguug      ----aa         u      u uguuugaggacguuuaucaggagugucgugaaagucuuaaaaucguuagugaaacuaaccaaa 

Annotation confidence Not enough data

Genome context

chr14: 44741121-44741396 [+]

Mature gma-miR5770c

• Accession: MIMAT0040959
• Description: Glycine max gma-miR5770c mature miRNA
• Sequence: 11 - UAGGACUAUGGUUUGGAUUU - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601