Stem-loop gma-MIR10196

Accession

MI0032963

Description

Glycine max gma-MIR10196 precursor miRNA

Sequence

ucucuauggaaaugaaacgcucgcucacaaccaaaguuguuacaagaccuauuucucuugcucgugucaaccaguuugguuaaucaaauaaccuuguuauggaauguguuagaguauccaaaaugaucagauacuccaacccauuauguagcaagguuauuugcuuugauuaaccaaaccgguuuacacaagcaagagaaauagaccauguaacaacuuUGAUUGUGGGAGAGCAUUUCAUuuccauagag
.((((((((((((((((.((((.(((((((.(((((((((((((.(..((((((((((((((.((((.((((.(((((((((((((((((((((((((((..((((.(((.(((((((...........))))))).))).))))..))))))))))))).....)))))))))))))).)))).)))).))))))))))))))..).))))))))))))).))))))).)))).))))))))))))))))

Structure

u                c    g       c             a ac              c    c    a              -----             gg    u   a       caaa 
 cucuauggaaaugaaa gcuc cucacaa caaaguuguuaca g  cuauuucucuugcu gugu aacc guuugguuaaucaa     auaaccuuguuau  aaug guu gaguauc    a
 |||||||||||||||| |||| ||||||| ||||||||||||| |  |||||||||||||| |||| |||| ||||||||||||||     |||||||||||||  |||| ||| |||||||    u
 gagauaccuuUACUUU CGAG GGGUGUU GUuucaacaaugu c  gauaaagagaacga caca uugg caaaccaauuaguu     uauuggaacgaug  uuac caa cucauag    g
-                A    A       A             a ca              a    u    c              ucguu             ua    c   c       acua 

Annotation confidence Not enough data

Genome context

chr19: 33987877-33988127 [+]

Mature gma-miR10196

• Accession: MIMAT0040963
• Description: Glycine max gma-miR10196 mature miRNA
• Sequence: 220 - UGAUUGUGGGAGAGCAUUUCAU - 241
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601