Stem-loop gma-MIR10199

Accession

MI0032966

Description

Glycine max gma-MIR10199 precursor miRNA

Sequence

30371 reads, 159.0 reads per million, 152 experiments

aacuucuaggAGCAAUGUUGAGCUUGGGCCUgaugaguggcagugggcUGGCUUGUUGCUGUGGGCU
....((((..((((((...(((((..(((((..((.....))..)))))))))))))))).))))..

Structure

aacu    gg      GUU     UG     ga  a 
    ucua  AGCAAU   GAGCU  GGCCU  ug g
    ||||  ||||||   |||||  |||||  || u
    GGGU  UCGUUG   UUCGG  Ucggg  ac g
--UC    -G      ---     --     ug  g 

Annotation confidence Medium

Genome context

chr3: 38934099-38934165 [+]

Mature gma-miR10199-5p

• Accession: MIMAT0040966
• Description: Glycine max gma-miR10199-5p mature miRNA
• Sequence: 11 - AGCAAUGUUGAGCUUGGGCCU - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR10199-3p

• Accession: MIMAT0054482
• Description: Glycine max gma-miR10199-3p mature miRNA
• Sequence: 49 - UGGCUUGUUGCUGUGGGCU - 67
• Evidence: experimental ; unknown

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601