miRBase entry: gma-MIR4392b

Stem-loop gma-MIR4392b


Accession
MI0032970
Description
Glycine max gma-MIR4392b precursor miRNA


Sequence

267728 reads, 1095.0 reads per million, 71 experiments
ggaagaucaagauggguuacacuucCGAGUCACAUUUUCACAUAGAaaagccaccgaacaggaacuuguuauauaauaccagcucgcuuuggaagucuuuuucUCUGCGAAAAUGUGAUUUCGGAacuguaccugagcuuucuuucuggg
((((((..(((.(((((.(((.(((((((((((((((((.((.((((((((..(((((...((.((.((........)).)).))..)))))..))..)))))).)).)))))))))).))))))).))))))))..)))))))))....

Structure
----      uc   -a     u   c       -          A  U      --  ca     cag  a  u  uau 
    ggaaga  aag  ugggu aca uucCGAG UCACAUUUUC CA AGAaaa  gc  ccgaa   ga cu gu   a
    ||||||  |||  ||||| ||| ||||||| |||||||||| || ||||||  ||  |||||   || || ||    
    cuuucu  uuc  gucca ugu aAGGCUU AGUGUAAAAG GU Ucuuuu  ug  gguuu   cu ga ca   u
gggu      --   ga     -   c       U          C  C      uc  aa     -cg  c  c  uaa 


Annotation confidence High
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Genome context
chr20: 156618-156767 [-]

Database links

Mature gma-miR4392b-5p

Accession MIMAT0054485
Description Glycine max gma-miR4392b-5p mature miRNA
Sequence 26 - CGAGUCACAUUUUCACAUAGA - 46
Evidence experimental
unknown

Mature gma-miR4392b-3p

Accession MIMAT0040970
Description Glycine max gma-miR4392b-3p mature miRNA
Sequence 104 - UCUGCGAAAAUGUGAUUUCGGA - 125
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25465409
    An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
    "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
    "Plant Cell (2014) 26:4584-4601