Stem-loop gma-MIR4392b

Accession

MI0032970

Description

Glycine max gma-MIR4392b precursor miRNA

Sequence

ggaagaucaagauggguuacacuuccgagucacauuuucacauagaaaagccaccgaacaggaacuuguuauauaauaccagcucgcuuuggaagucuuuuucUCUGCGAAAAUGUGAUUUCGGAacuguaccugagcuuucuuucuggg
((((((..(((.(((((.(((.(((((((((((((((((.((.((((((((..(((((...((.((.((........)).)).))..)))))..))..)))))).)).)))))))))).))))))).))))))))..)))))))))....

Structure

----      uc   -a     u   c       -          a  u      --  ca     cag  a  u  uau 
    ggaaga  aag  ugggu aca uuccgag ucacauuuuc ca agaaaa  gc  ccgaa   ga cu gu   a
    ||||||  |||  ||||| ||| ||||||| |||||||||| || ||||||  ||  |||||   || || ||    
    cuuucu  uuc  gucca ugu aAGGCUU AGUGUAAAAG GU Ucuuuu  ug  gguuu   cu ga ca   u
gggu      --   ga     -   c       U          C  C      uc  aa     -cg  c  c  uaa 

Annotation confidence Not enough data

Genome context

chr20: 156618-156767 [-]

Mature gma-miR4392b

• Accession: MIMAT0040970
• Description: Glycine max gma-miR4392b mature miRNA
• Sequence: 104 - UCUGCGAAAAUGUGAUUUCGGA - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25465409
   An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
   "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
   "Plant Cell (2014) 26:4584-4601