miRBase entry: cgr-mir-16-2

Stem-loop cgr-mir-16-2


Accession
MI0033080
Description
Cricetulus griseus cgr-mir-16-2 precursor miRNA


Sequence

1748899 reads, 11119.0 reads per million, 55 experiments
cauacuuguuccgcucUAGCAGCACGUAAAUAUUGGCGUagugaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUUAgugugacaggcaua
....((((((.((((..(((((((((..((((((((.((.................)).))))))))..)))))))))..)))).))))))....

Structure
caua      c    cU         UA        C  agugaaa 
    cuuguu cgcu  AGCAGCACG  AAUAUUGG GU       u
    |||||| ||||  |||||||||  |||||||| ||       a
    ggacag gugA  UCGUCGUGU  UUAUAACC ca       a
auac      u    UU         UA        A  aauuaua 


Annotation confidence High
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Genome context
JH001756.1: 252977-253071 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-16-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-16-5p

Accession MIMAT0023793
Description Cricetulus griseus cgr-miR-16-5p mature miRNA
Sequence 17 - UAGCAGCACGUAAAUAUUGGCGU - 39
Evidence experimental
Illumina [1]

Mature cgr-miR-16-2-3p

Accession MIMAT0041151
Description Cricetulus griseus cgr-miR-16-2-3p mature miRNA
Sequence 59 - ACCAAUAUUAUUGUGCUGCUUUA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25689160
    Annotation of additional evolutionary conserved microRNAs in CHO cells from updated genomic data
    "Diendorfer AB, Hackl M, Klanert G, Jadhav V, Reithofer M, Stiefel F, Hesse F, Grillari J, Borth N"
    "Biotechnol Bioeng (2015) 112:1488-1493