Stem-loop tcf-bantam

Accession

MI0033186

Description

Triops cancriformis tcf-bantam precursor miRNA

Sequence

1602932 reads, 73724.0 reads per million, 6 experiments

CUAGUUUUCUCAGUGAUCUGCCAGAuauuguuaaaauuucUGAGAUCAUUGUGAAAGCUGAUU
.((((((((.(((((((((..((((.(((.....))).))))))))))))).))))))))...

Structure

--C        U         GC    u   g 
   UAGUUUUC CAGUGAUCU  CAGA auu u
   |||||||| |||||||||  |||| ||| u
   GUCGAAAG GUUACUAGA  GUcu uaa a
UUA        U         --    u   a 

Annotation confidence High

Genome context

Unknown

Mature tcf-bantam-5p

• Accession: MIMAT0059191
• Description: Triops cancriformis tcf-bantam-5p mature miRNA
• Sequence: 1 - CUAGUUUUCUCAGUGAUCUGCCAGA - 25
• Evidence: experimental ; Illumina [1]

Mature tcf-bantam-3p

• Accession: MIMAT0041339
• Description: Triops cancriformis tcf-bantam-3p mature miRNA
• Sequence: 41 - UGAGAUCAUUGUGAAAGCUGAUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242