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Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp) |
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|---|---|
| PubMed ID | 25525151 |
| Authors | "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A" |
| Journal | "RNA |
| Volume | 21 |
| Pages | 230-242 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| tcf-bantam | MI0033186 | None | None | None | High | ||
| tcf-let-7 | MI0033187 | None | None | None | High | ||
| tcf-mir-1 | MI0033188 | None | None | None | High | ||
| tcf-mir-2a-1 | MI0033189 | None | None | None | High | ||
| tcf-mir-2a-2 | MI0033190 | None | None | None | High | ||
| tcf-mir-2b | MI0033191 | None | None | None | High | ||
| tcf-mir-7 | MI0033192 | None | None | None | High | ||
| tcf-mir-8 | MI0033193 | None | None | None | High | ||
| tcf-mir-9a | MI0033194 | None | None | None | High | ||
| tcf-mir-9b | MI0033195 | None | None | None | High | ||
| tcf-mir-10 | MI0033196 | None | None | None | High | ||
| tcf-mir-12 | MI0033197 | None | None | None | High | ||
| tcf-mir-13 | MI0033198 | None | None | None | High | ||
| tcf-mir-31 | MI0033199 | None | None | None | High | ||
| tcf-mir-33 | MI0033200 | None | None | None | High | ||
| tcf-mir-34 | MI0033201 | None | None | None | High | ||
| tcf-mir-279f | MI0033202 | None | None | None | High | ||
| tcf-mir-71 | MI0033203 | None | None | None | High | ||
| tcf-mir-87 | MI0033204 | None | None | None | - | ||
| tcf-mir-92a | MI0033205 | None | None | None | High | ||
| tcf-mir-92b | MI0033206 | None | None | None | High | ||
| tcf-mir-96 | MI0033207 | None | None | None | High | ||
| tcf-mir-100 | MI0033208 | None | None | None | High | ||
| tcf-mir-124 | MI0033209 | None | None | None | High | ||
| tcf-mir-125 | MI0033210 | None | None | None | High | ||
| tcf-mir-133 | MI0033211 | None | None | None | High | ||
| tcf-mir-137 | MI0033212 | None | None | None | - | ||
| tcf-mir-153 | MI0033213 | None | None | None | High | ||
| tcf-mir-184 | MI0033214 | None | None | None | High | ||
| tcf-mir-190 | MI0033215 | None | None | None | Medium | ||
| tcf-mir-193 | MI0033216 | None | None | None | High | ||
| tcf-mir-210 | MI0033217 | None | None | None | High | ||
| tcf-mir-219 | MI0033218 | None | None | None | High | ||
| tcf-mir-252a | MI0033219 | None | None | None | High | ||
| tcf-mir-252b | MI0033220 | None | None | None | High | ||
| tcf-mir-263a | MI0033221 | None | None | None | High | ||
| tcf-mir-263b | MI0033222 | None | None | None | High | ||
| tcf-mir-275 | MI0033223 | None | None | None | High | ||
| tcf-mir-276 | MI0033224 | None | None | None | High | ||
| tcf-mir-277 | MI0033225 | None | None | None | High | ||
| tcf-mir-278 | MI0033226 | None | None | None | High | ||
| tcf-mir-279a | MI0033227 | None | None | None | High | ||
| tcf-mir-279b | MI0033228 | None | None | None | High | ||
| tcf-mir-279c | MI0033229 | None | None | None | High | ||
| tcf-mir-279d | MI0033230 | None | None | None | High | ||
| tcf-mir-279e | MI0033231 | None | None | None | High | ||
| tcf-mir-281 | MI0033232 | None | None | None | High | ||
| tcf-mir-282 | MI0033233 | None | None | None | - | ||
| tcf-mir-283 | MI0033234 | None | None | None | High | ||
| tcf-mir-285 | MI0033235 | None | None | None | High | ||
| tcf-mir-305 | MI0033236 | None | None | None | High | ||
| tcf-mir-307 | MI0033237 | None | None | None | Medium | ||
| tcf-mir-315 | MI0033238 | None | None | None | High | ||
| tcf-mir-317 | MI0033239 | None | None | None | Medium | ||
| tcf-mir-375 | MI0033240 | None | None | None | High | ||
| tcf-mir-745 | MI0033241 | None | None | None | High | ||
| tcf-mir-750 | MI0033242 | None | None | None | High | ||
| tcf-mir-965 | MI0033243 | None | None | None | High | ||
| tcf-mir-981 | MI0033244 | None | None | None | High | ||
| tcf-mir-993 | MI0033245 | None | None | None | High | ||
| tcf-mir-995 | MI0033246 | None | None | None | High | ||
| tcf-mir-996 | MI0033247 | None | None | None | High | ||
| tcf-mir-998 | MI0033248 | None | None | None | - | ||
| tcf-mir-1175 | MI0033249 | None | None | None | High | ||
| tcf-mir-2788 | MI0033250 | None | None | None | High | ||
| tcf-mir-2944a | MI0033251 | None | None | None | High | ||
| tcf-mir-3477 | MI0033252 | None | None | None | High | ||
| tcf-mir-3791 | MI0033253 | None | None | None | High | ||
| tcf-mir-iab-4 | MI0033254 | None | None | None | High | ||
| tcf-mir-iab-8 | MI0033255 | None | None | None | Medium | ||
| tcf-mir-10294 | MI0033256 | None | None | None | High | ||
| tcf-mir-10295 | MI0033257 | None | None | None | High | ||
| tcf-mir-10296 | MI0033258 | None | None | None | High | ||
| tcf-mir-10297 | MI0033259 | None | None | None | High | ||
| tcf-mir-10298a | MI0033260 | None | None | None | Medium | ||
| tcf-mir-10299 | MI0033261 | None | None | None | High | ||
| tcf-mir-10300 | MI0033262 | None | None | None | High | ||
| tcf-mir-2944b | MI0033263 | None | None | None | High | ||
| tcf-mir-10301 | MI0033264 | None | None | None | - | ||
| tcf-mir-10302 | MI0033265 | None | None | None | High | ||
| tcf-mir-10303a | MI0033266 | None | None | None | - | ||
| tcf-mir-316 | MI0033267 | None | None | None | High | ||
| tcf-mir-10304 | MI0033268 | None | None | None | Medium | ||
| tcf-mir-10305 | MI0033269 | None | None | None | High | ||
| tcf-mir-79 | MI0033270 | None | None | None | High | ||
| tcf-mir-309 | MI0033271 | None | None | None | High | ||
| tcf-mir-318 | MI0033272 | None | None | None | High | ||
| tcf-mir-10306 | MI0033273 | None | None | None | High | ||
| tcf-mir-10307 | MI0033274 | None | None | None | - | ||
| tcf-mir-10402 | MI0033275 | None | None | None | High | ||
| tcf-mir-10403 | MI0033276 | None | None | None | High | ||
| tcf-mir-10308 | MI0033277 | None | None | None | - | ||
| tcf-mir-10309 | MI0033278 | None | None | None | Medium | ||
| tcf-mir-10310-1 | MI0033279 | None | None | None | - | ||
| tcf-mir-10310-2 | MI0033280 | None | None | None | - | ||
| tcf-mir-10311 | MI0033281 | None | None | None | High | ||
| tcf-mir-10312 | MI0033282 | None | None | None | - | ||
| tcf-mir-10313 | MI0033283 | None | None | None | High | ||
| tcf-mir-10314 | MI0033284 | None | None | None | - | ||
| tcf-mir-10303b | MI0033285 | None | None | None | - | ||
| tcf-mir-10315a | MI0033286 | None | None | None | - | ||
| tcf-mir-10316a | MI0033287 | None | None | None | Medium | ||
| tcf-mir-10315b | MI0033288 | None | None | None | - | ||
| tcf-mir-10317 | MI0033289 | None | None | None | - | ||
| tcf-mir-10318 | MI0033290 | None | None | None | - | ||
| tcf-mir-10319 | MI0033291 | None | None | None | - | ||
| tcf-mir-10320 | MI0033292 | None | None | None | High | ||
| tcf-mir-10321 | MI0033293 | None | None | None | High | ||
| tcf-mir-10322 | MI0033294 | None | None | None | High | ||
| tcf-mir-10323 | MI0033295 | None | None | None | - | ||
| tcf-mir-10324 | MI0033296 | None | None | None | High | ||
| tcf-mir-10325 | MI0033297 | None | None | None | Medium | ||
| tcf-mir-10326 | MI0033298 | None | None | None | - | ||
| tcf-mir-10327 | MI0033299 | None | None | None | - | ||
| tcf-mir-10328 | MI0033300 | None | None | None | Medium | ||
| tcf-mir-10329 | MI0033301 | None | None | None | High | ||
| tcf-mir-10330 | MI0033302 | None | None | None | - | ||
| tcf-mir-10331 | MI0033303 | None | None | None | High | ||
| tcf-mir-10332 | MI0033304 | None | None | None | High | ||
| tcf-mir-10333 | MI0033305 | None | None | None | High | ||
| tcf-mir-10334 | MI0033306 | None | None | None | - | ||
| tcf-mir-10335 | MI0033307 | None | None | None | High | ||
| tcf-mir-10336 | MI0033308 | None | None | None | Medium | ||
| tcf-mir-10337 | MI0033309 | None | None | None | Low | ||
| tcf-mir-10338 | MI0033310 | None | None | None | - | ||
| tcf-mir-10339 | MI0033311 | None | None | None | Medium | ||
| tcf-mir-10340 | MI0033312 | None | None | None | - | ||
| tcf-mir-10316b | MI0033313 | None | None | None | High | ||
| tcf-mir-10341-1 | MI0033314 | None | None | None | - | ||
| tcf-mir-10341-2 | MI0033315 | None | None | None | - | ||
| tcf-mir-10342 | MI0033316 | None | None | None | - | ||
| tcf-mir-10343 | MI0033317 | None | None | None | Medium | ||
| tcf-mir-10344 | MI0033318 | None | None | None | High | ||
| tcf-mir-10345 | MI0033319 | None | None | None | - | ||
| tcf-mir-10346-1 | MI0033320 | None | None | None | - | ||
| tcf-mir-10346-2 | MI0033321 | None | None | None | - | ||
| tcf-mir-10316c | MI0033322 | None | None | None | Medium | ||
| tcf-mir-10347-1 | MI0033323 | None | None | None | - | ||
| tcf-mir-10347-2 | MI0033324 | None | None | None | - | ||
| tcf-mir-10348 | MI0033325 | None | None | None | - | ||
| tcf-mir-10349 | MI0033326 | None | None | None | High | ||
| tcf-mir-10350 | MI0033327 | None | None | None | - | ||
| tcf-mir-10351 | MI0033328 | None | None | None | Medium | ||
| tcf-mir-10352 | MI0033329 | None | None | None | - | ||
| tcf-mir-10298b | MI0033330 | None | None | None | Medium | ||
| tcf-mir-10353 | MI0033331 | None | None | None | - | ||
| tcf-mir-10354 | MI0033332 | None | None | None | High | ||
| tcf-mir-87b | MI0033333 | None | None | None | High | ||
| sme-lin-4 | MI0005125 | None | gb|NNSW01000076.1| | 2511113 | 2511209 | - | High |
| sme-mir-2a-2 | MI0005132 | None | gb|NNSW01000001.1| | 13481731 | 13481811 | + | High |
| cqu-let-7 | MI0013570 | None | supercont3.4 | 280595 | 280685 | + | - |
| cqu-mir-2 | MI0013604 | None | supercont3.366 | 116852 | 116935 | - | - |
| cqu-mir-125 | MI0013562 | None | supercont3.4 | 280955 | 281049 | + | - |
| cqu-mir-124 | MI0013565 | None | supercont3.8 | 2074723 | 2074800 | + | - |
| cqu-mir-1 | MI0013566 | None | supercont3.78 | 246202 | 246278 | + | - |
| cqu-mir-100 | MI0013585 | None | supercont3.4 | 271392 | 271501 | + | - |
| cqu-mir-87 | MI0013627 | None | supercont3.431 | 379740 | 379823 | + | - |
| asu-lin-4 | MI0018524 | None | gb|JH878910.1| | 382191 | 382267 | + | - |
| asu-let-7 | MI0018525 | None | gb|JH878909.1| | 2112665 | 2112748 | - | - |
| asu-mir-34 | MI0018535 | None | gb|JH879157.1| | 69553 | 69645 | - | - |
| asu-mir-124 | MI0018567 | None | gb|JH878994.1| | 256211 | 256286 | + | - |
| asu-mir-1 | MI0018528 | None | gb|JH878949.1| | 89750 | 89831 | + | - |
| asu-mir-2a-1 | MI0018529 | None | gb|JH878922.1| | 285232 | 285309 | + | - |
| aae-let-7 | MI0013505 | 74124 | ref|NW_001811163.1| | 1156326 | 1156396 | + | High |
| aae-mir-125 | MI0013465 | 3408 | ref|NW_001811163.1| | 1156595 | 1156689 | + | High |
| aae-mir-34 | MI0013456 | 45559 | ref|NW_001810977.1| | 509521 | 509649 | + | High |
| aae-mir-124 | MI0013488 | 14774 | ref|NW_001811351.1| | 1664615 | 1664690 | - | High |
| aae-mir-1 | MI0013455 | 530586 | ref|NW_001811588.1| | 291326 | 291401 | + | High |
| aae-mir-100 | MI0013497 | 2715 | ref|NW_001811163.1| | 1142154 | 1142279 | + | High |
| aae-mir-2a | MI0013443 | 1891 | ref|NW_001810981.1| | 888581 | 888677 | - | High |
| aae-mir-87 | MI0013461 | 137 | ref|NW_001811086.1| | 1010781 | 1010887 | + | High |
| tca-let-7 | MI0008896 | None | ref|NC_007421.3| | 4363419 | 4363496 | + | High |
| tca-mir-125 | MI0008913 | None | ref|NC_007421.3| | 4363608 | 4363684 | + | High |
| tca-mir-34 | MI0008906 | None | ref|NC_007422.5| | 14503137 | 14503215 | + | High |
| tca-mir-124 | MI0008912 | None | ref|NC_007420.3| | 13734448 | 13734526 | - | High |
| tca-mir-1 | MI0008892 | None | ref|NC_007420.3| | 10584663 | 10584734 | - | High |
| tca-mir-100 | MI0008911 | None | ref|NC_007421.3| | 4363285 | 4363360 | + | High |
| bta-mir-100 | MI0009720 | 673 | 15 | 32818528 | 32818603 | - | High |
| nve-mir-100 | MI0010144 | 45475 | scaffold_82 | 122012 | 122095 | + | High |
| ame-let-7 | MI0005726 | None | CM000061.5 | 8436647 | 8436746 | + | High |
| ame-mir-125 | MI0001578 | None | CM000061.5 | 8437175 | 8437281 | + | High |
| ame-mir-34 | MI0005739 | None | CM000058.5 | 6962684 | 6962783 | + | High |
| ame-mir-124 | MI0001577 | None | CM000057.5 | 10394030 | 10394106 | + | - |
| ame-mir-100 | MI0005728 | None | CM000061.5 | 8436007 | 8436106 | + | High |
| xtr-mir-124-1 | MI0004930 | None | 6 | 118136265 | 118136352 | + | High |
| xtr-mir-100 | MI0004927 | None | 7 | 120161035 | 120161110 | - | High |
| dme-let-7 | MI0000416 | 7587 | chr2L | 18472034 | 18472111 | + | High |
| dme-mir-125 | MI0000417 | 2646 | chr2L | 18472315 | 18472424 | + | High |
| dme-mir-34 | MI0000371 | 32763 | chr3R | 10100936 | 10101034 | + | High |
| dme-mir-124 | MI0000373 | 23619 | chr2L | 17566370 | 17566469 | + | High |
| dme-mir-1 | MI0000116 | 107366 | chr2L | 20487441 | 20487531 | + | High |
| dme-mir-100 | MI0000378 | 245 | chr2L | 18471434 | 18471533 | + | High |
| dme-mir-2a-2 | MI0000118 | 16640 | chr2L | 19569490 | 19569561 | - | High |
| dme-mir-87 | MI0000382 | 543 | chr2L | 9950418 | 9950516 | - | High |
| dpu-mir-34 | MI0012244 | None | GL732526.1 | 1242035 | 1242135 | - | - |
| dpu-mir-124 | MI0012220 | None | GL732642.1 | 76880 | 76980 | + | - |
| dpu-mir-1 | MI0012216 | None | GL732523.1 | 1720868 | 1720961 | - | - |
| dpu-mir-100 | MI0012218 | None | GL732593.1 | 446640 | 446740 | - | - |
| dpu-mir-87-1 | MI0012251 | None | None | None | Low | ||
| gga-mir-100 | MI0001258 | 13390 | 24 | 3390461 | 3390540 | + | High |
| cel-lin-4 | MI0000002 | 2214 | chrII | 5902254 | 5902347 | + | High |
| cel-let-7 | MI0000001 | 15959 | chrX | 14744173 | 14744271 | - | High |
| cel-mir-2 | MI0000004 | 1579 | chrI | 9372768 | 9372865 | - | High |
| cel-mir-34 | MI0000005 | 2563 | chrX | 2969752 | 2969848 | - | High |
| cel-mir-124 | MI0000302 | 561 | chrIV | 11871738 | 11871833 | + | High |
| cel-mir-1 | MI0000003 | 57505 | chrI | 6172662 | 6172757 | - | High |
| cel-mir-87 | MI0000058 | 946 | chrV | 12038688 | 12038781 | - | High |
| mmu-mir-100 | MI0000692 | 870 | 9 | 41442721 | 41442800 | + | High |
| bmo-let-7 | MI0004968 | 17656 | dbj|BSVE01000023.1| | 16550385 | 16550488 | - | High |
| bmo-mir-34 | MI0004975 | 267 | dbj|BSVE01000026.1| | 7580904 | 7581001 | + | High |
| bmo-mir-124 | MI0004976 | None | dbj|BSVE01000004.1| | 14338699 | 14338783 | + | High |
| bmo-mir-100 | MI0012291 | 16771 | dbj|BSVE01000023.1| | 16552872 | 16553013 | - | - |
| bmo-mir-2a-2 | MI0008339 | 291 | dbj|BSVE01000001.1| | 12838484 | 12838563 | - | Medium |
| bmo-mir-87 | MI0008344 | 34 | dbj|BSVE01000028.1| | 8412542 | 8412642 | - | High |
| hsa-mir-100 | MI0000102 | 1446 | chr11 | 122152229 | 122152308 | - | High |