Stem-loop tcf-mir-100

Accession

MI0033208

Description

Triops cancriformis tcf-mir-100 precursor miRNA

Literature search

1 open access papers mention tcf-mir-100
(1 sentences)

Sequence

92754 reads, 4024.0 reads per million, 6 experiments

AACCCGUAGAUCCGAACUUGUGuggcaaccucgcaauuucuuucgCAAGUUCGAUUCUAAGGGCGCA
..(((.((((..((((((((((..((......)).........))))))))))..)))).)))....

Structure

--AA   G    UC          -------ug  aa 
    CCC UAGA  CGAACUUGUG         gc  c
    ||| ||||  ||||||||||         ||   
    GGG AUCU  GCUUGAACgc         cg  c
ACGC   A    UA          uuucuuuaa  cu 

Annotation confidence High

Genome context

Unknown

Mature tcf-miR-100-5p

• Accession: MIMAT0041367
• Description: Triops cancriformis tcf-miR-100-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature tcf-miR-100-3p

• Accession: MIMAT0059205
• Description: Triops cancriformis tcf-miR-100-3p mature miRNA
• Sequence: 46 - CAAGUUCGAUUCUAAGGGCGCA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242