Stem-loop aae-mir-100

Accession

MI0013497

Description

Aedes aegypti aae-mir-100 precursor miRNA

Literature search

9 open access papers mention aae-mir-100
(10 sentences)

Sequence

5461850 reads, 27350.0 reads per million, 91 experiments

gcguagugguuguaguuacccauuugcaggAACCCGUAGAUCCGAACUUGUGcugccguuucacauguuaCAAGAACGGAUGUAUGGGAUUCUGccgauguauggcuaaagcaucgaucgauuugu
(((...((((((((((((..((((.((((((.((((((.(((((..(((((((((........)).).))))))..))))).)))))).)))))).))))..))))))......))))))...)))

Structure

   uag      ------      cc    u      A      G     AA      - -  ccg 
gcg   ugguug      uaguua  cauu gcaggA CCCGUA AUCCG  CUUGUG c ug   u
|||   ||||||      ||||||  |||| |||||| |||||| |||||  |||||| | ||    
ugu   gcuagc      aucggu  guag cGUCUU GGGUAU UAGGC  GAACau g ac   u
   uua      uacgaa      au    c      A      G     AA      u u  acu 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811163.1|: 1142154-1142279 [+]

Mature aae-miR-100-5p

• Accession: MIMAT0014291
• Description: Aedes aegypti aae-miR-100-5p mature miRNA
• Sequence: 31 - AACCCGUAGAUCCGAACUUGUG - 52
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-100-3p

• Accession: MIMAT0057350
• Description: Aedes aegypti aae-miR-100-3p mature miRNA
• Sequence: 71 - CAAGAACGGAUGUAUGGGAUUCUG - 94
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119