Stem-loop tcf-mir-278

Accession

MI0033226

Description

Triops cancriformis tcf-mir-278 precursor miRNA

Sequence

8750 reads, 385.0 reads per million, 6 experiments

CCGGACGAAAAUCUUCUUGCCAGACcuuaauuccaaaucaugucguaugauguauuggUCGGUGGGAUUUUCGUCCGUU
.((((((((((((((...(((.((((..(((.....((((((...))))))..))))))))))))))))))))))))..

Structure

-C              CUU   A    uu   uccaa      u 
  CGGACGAAAAUCUU   GCC GACc  aau     aucaug  
  ||||||||||||||   ||| ||||  |||     |||||| c
  GCCUGCUUUUAGGG   UGG CUgg  uua     uaguau  
UU              ---   -    --   ---ug      g 

Annotation confidence High

Genome context

Unknown

Mature tcf-miR-278-5p

• Accession: MIMAT0059216
• Description: Triops cancriformis tcf-miR-278-5p mature miRNA
• Sequence: 1 - CCGGACGAAAAUCUUCUUGCCAGAC - 25
• Evidence: experimental ; Illumina [1]

Mature tcf-miR-278-3p

• Accession: MIMAT0041391
• Description: Triops cancriformis tcf-miR-278-3p mature miRNA
• Sequence: 59 - UCGGUGGGAUUUUCGUCCGUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242