miRBase entry: tcf-mir-317

Stem-loop tcf-mir-317


Accession
MI0033239
Description
Triops cancriformis tcf-mir-317 precursor miRNA


Sequence

220575 reads, 10078.0 reads per million, 6 experiments
CGGGAGCCACCCUGAGUUCACUuggacuugaaaagUGAACACAGCUGGUGGUAUCU
.(((.(((((((((.((((((((.........)))))))).)))..)))))).)))

Structure
C   A      --   A        gga 
 GGG GCCACC  CUG GUUCACUu   c
 ||| ||||||  ||| ||||||||   u
 UCU UGGUGG  GAC CAAGUgaa   u
-   A      UC   A        aag 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcf-miR-317-5p

Accession MIMAT0059226
Description Triops cancriformis tcf-miR-317-5p mature miRNA
Sequence 1 - CGGGAGCCACCCUGAGUUCACU - 22
Evidence experimental
Illumina [1]

Mature tcf-miR-317-3p

Accession MIMAT0041406
Description Triops cancriformis tcf-miR-317-3p mature miRNA
Sequence 36 - UGAACACAGCUGGUGGUAUCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25525151
    Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
    "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
    "RNA (2015) 21:230-242