Stem-loop xtr-mir-124-1

Accession

MI0004930

Description

Xenopus tropicalis xtr-mir-124-1 precursor miRNA

Literature search

11 open access papers mention xtr-mir-124-1
(65 sentences)

Sequence

1089 reads, 101.0 reads per million, 3 experiments

uaagucucugacucucCGUGUUCACAGCGGACCUUGAUUuaaugucauacaaUUAAGGCACGCGGUGAAUGCCAagaguggagccuac
..((.((((.(((((..((((((((.(((..((((((((...........))))))))..))).))))))))..))))))))).))..

Structure

ua  u    g     cC        A   GA        uaau 
  ag cucu acucu  GUGUUCAC GCG  CCUUGAUU    g
  || |||| |||||  |||||||| |||  ||||||||    u
  uc gagg ugaga  CGUAAGUG CGC  GGAAUUaa    c
ca  c    -     AC        G   AC        caua 

Annotation confidence High

Genome context

6: 118136265-118136352 [+]

Mature xtr-miR-124-1-5p

• Accession: MIMAT0052163
• Description: Xenopus tropicalis xtr-miR-124-1-5p mature miRNA
• Sequence: 17 - CGUGUUCACAGCGGACCUUGAUU - 39
• Evidence: experimental ; Northern [1]

Mature xtr-miR-124-1-3p

• Accession: MIMAT0003683
• Description: Xenopus tropicalis xtr-miR-124-1-3p mature miRNA
• Sequence: 53 - UUAAGGCACGCGGUGAAUGCCA - 74
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112