miRBase entry: tcf-mir-10335

Stem-loop tcf-mir-10335


Accession
MI0033307
Description
Triops cancriformis tcf-mir-10335 precursor miRNA


Sequence

559 reads, 31.0 reads per million, 6 experiments
UUGUCGGAGUAGAUACUCAAUGGCuugccgcgggucgcagcgaagcgacgcaguacaagUAGGAAGUCAUCCGUCGACAAGGU
(((((((.(..((((((.....(((((..(((.(((((......))))).).)).)))))....))).)))).)))))))...

Structure
---       A UA   -   CAAUG     cc  - g     ag 
   UUGUCGG G  GAU ACU     GCuug  gc g gucgc  c
   ||||||| |  ||| |||     |||||  || | |||||   
   AACAGCU C  CUA UGA     Ugaac  ug c cagcg  g
UGG       G --   C   -AGGA     -a  a g     aa 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcf-miR-10335-5p

Accession MIMAT0041475
Description Triops cancriformis tcf-miR-10335-5p mature miRNA
Sequence 1 - UUGUCGGAGUAGAUACUCAAUGGC - 24
Evidence experimental
Illumina [1]

Mature tcf-miR-10335-3p

Accession MIMAT0059273
Description Triops cancriformis tcf-miR-10335-3p mature miRNA
Sequence 60 - UAGGAAGUCAUCCGUCGACAAGGU - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25525151
    Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
    "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
    "RNA (2015) 21:230-242