Stem-loop aae-mir-87

Accession

MI0013461

Description

Aedes aegypti aae-mir-87 precursor miRNA

Literature search

2 open access papers mention aae-mir-87
(3 sentences)

Sequence

60406 reads, 674.0 reads per million, 90 experiments

accagauugucacuggcCAGCCUGAAAUUUGCUAAACCUguguguauuugauucaaacaaucaagGUGAGCAAAUUUUCAGGUGUGUcggagaacaaucgcaaucau
....(((((((.(((((..((((((((((((((..(((((..(((...........)))..).)))).)))))).))))))))..))))).).))))))........

Structure

----acca      - a     CA        -      AA    - ug   auuu 
        gauugu c cuggc  GCCUGAAA UUUGCU  ACCU g  ugu    g
        |||||| | |||||  |||||||| ||||||  |||| |  |||    a
        cuaaca g ggcUG  UGGACUUU AAACGA  UGga c  aca    u
uacuaacg      a a     UG        U      -G    a ua   aacu 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811086.1|: 1010781-1010887 [+]

Mature aae-miR-87-5p

• Accession: MIMAT0057330
• Description: Aedes aegypti aae-miR-87-5p mature miRNA
• Sequence: 18 - CAGCCUGAAAUUUGCUAAACCU - 39
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-87-3p

• Accession: MIMAT0014252
• Description: Aedes aegypti aae-miR-87-3p mature miRNA
• Sequence: 66 - GUGAGCAAAUUUUCAGGUGUGU - 87
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119