Stem-loop dme-mir-87

Accession

MI0000382

Description

Drosophila melanogaster dme-mir-87 precursor miRNA mir-87

Gene
family

RF00726; mir-87

Literature search

6 open access papers mention dme-mir-87
(9 sentences)

Sequence

32500 reads, 543 reads per million, 43 experiments

aacacauuucauUCGCGCCUGUAUCUUGCUGAACcgcugccauuauggccaacgauccggUUGAGCAAAAUUUCAGGUGUGUGAgaaauguguuuagca
((((((((((.(.((((((((.((.(((((.(((((..((((...))))........))))).))))).))..)))))))).).)))))))))).....

Structure

-----          a U        -U  C     G     ------cu    u 
     aacacauuuc u CGCGCCUG  AU UUGCU AACcg        gcca  
     |||||||||| | ||||||||  || ||||| |||||        |||| u
     uuguguaaag G GUGUGGAC  UA AACGA UUggc        cggu  
acgau          A U        UU  A     G     cuagcaac    a 

Annotation confidence High

Genome context

chr2L: 9950418-9950516 [-]

Mature dme-miR-87-3p

• Accession: MIMAT0000361
• Description: Drosophila melanogaster dme-miR-87-3p mature miRNA
• Sequence: 61 - UUGAGCAAAAUUUCAGGUGUGUGA - 84
• Evidence: experimental ; Northern [1-2], 454 [4-5], Illumina [5]

Mature dme-miR-87-5p

• Accession: MIMAT0020821
• Description: Drosophila melanogaster dme-miR-87-5p mature miRNA
• Sequence: 13 - UCGCGCCUGUAUCUUGCUGAAC - 34
• Evidence: not_experimental

References

1. PubMed ID: 12812784
   Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity
   "Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V"
   "Dev Biol (2003) 259:9-18


2. PubMed ID: 12919683
   The small RNA profile during Drosophila melanogaster development
   "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
   "Dev Cell (2003) 5:337-350


3. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


4. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879


5. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42