Stem-loop cel-mir-124

Accession

MI0000302

Description

Caenorhabditis elegans cel-mir-124 precursor miRNA

Literature search

12 open access papers mention cel-mir-124
(117 sentences)

Sequence

13162 reads, 462 reads per million, 16 experiments

gucccacuugucaucugGCAUGCACCCUAGUGACUUUAGUggacaucuaagucuuccaacUAAGGCACGCGGUGAAUGCCAcguggccaugauggg
..(((((..(((((.((((((.((((...(((.(((((((((((......))))....))))))))))..)))).)))))).)))))...).))))

Structure

gu    - -uu     c      G    CUA   A       ----    au 
  ccca c   gucau ugGCAU CACC   GUG CUUUAGU    ggac  c
  |||| |   ||||| |||||| ||||   ||| |||||||    ||||   
  gggu g   cggug ACCGUA GUGG   CAC GGAAUca    ucug  u
--    a uac     c      A    -CG   -       accu    aa 

Annotation confidence Medium

Genome context

chrIV: 11871738-11871833 [+]

Mature cel-miR-124-5p

• Accession: MIMAT0015111
• Description: Caenorhabditis elegans cel-miR-124-5p mature miRNA
• Sequence: 18 - GCAUGCACCCUAGUGACUUUAGU - 40
• Evidence: experimental ; CLIPseq [5]

Mature cel-miR-124-3p

• Accession: MIMAT0000282
• Description: Caenorhabditis elegans cel-miR-124-3p mature miRNA
• Sequence: 61 - UAAGGCACGCGGUGAAUGCCA - 81
• Evidence: experimental ; cloned [1], Northern [1], 454 [3], Illumina [4], CLIPseq [5]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 12747828
   MicroRNAs and other tiny endogenous RNAs in C. elegans
   "Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D"
   "Curr Biol (2003) 13:807-818


3. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


4. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


5. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179