Stem-loop tcf-mir-31

Accession

MI0033199

Description

Triops cancriformis tcf-mir-31 precursor miRNA

Sequence

82171 reads, 3659.0 reads per million, 6 experiments

AGGCAAGAUGUCGGCAUAGCUgagauauuuucacuuuuugguauagaaaaguaagCUGUGUUUACAUCGUGCCAUC
.((((.(((((.(((((((((((((...))))(((((((......))))))).))))))))).))))).))))...

Structure

--A    A     C         gagauauuuuc       gg 
   GGCA GAUGU GGCAUAGCU           acuuuuu  u
   |||| ||||| |||||||||           |||||||   
   CCGU CUACA UUGUGUCga           ugaaaag  a
CUA    G     U         ----------a       au 

Annotation confidence High

Genome context

Unknown

Mature tcf-miR-31-5p

• Accession: MIMAT0041357
• Description: Triops cancriformis tcf-miR-31-5p mature miRNA
• Sequence: 1 - AGGCAAGAUGUCGGCAUAGCU - 21
• Evidence: experimental ; Illumina [1]

Mature tcf-miR-31-3p

• Accession: MIMAT0059198
• Description: Triops cancriformis tcf-miR-31-3p mature miRNA
• Sequence: 56 - CUGUGUUUACAUCGUGCCAUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242