Stem-loop tcf-mir-1

Accession

MI0033188

Description

Triops cancriformis tcf-mir-1 precursor miRNA

Sequence

62331 reads, 2837.0 reads per million, 6 experiments

CCAUGCUUCCUUACUUCCCAUAgcgauaugacauaUGGAAUGUAAAGAAGUAUGGAG
(((((((((.((((...(((((...........)))))...)))).)))))))))..

Structure

--         C    UUC     gcga 
  CCAUGCUUC UUAC   CCAUA    u
  ||||||||| ||||   |||||    a
  GGUAUGAAG AAUG   GGUau    u
GA         A    UAA     acag 

Annotation confidence High

Genome context

Unknown

Mature tcf-miR-1-5p

• Accession: MIMAT0059192
• Description: Triops cancriformis tcf-miR-1-5p mature miRNA
• Sequence: 1 - CCAUGCUUCCUUACUUCCCAUA - 22
• Evidence: experimental ; Illumina [1]

Mature tcf-miR-1-3p

• Accession: MIMAT0041342
• Description: Triops cancriformis tcf-miR-1-3p mature miRNA
• Sequence: 36 - UGGAAUGUAAAGAAGUAUGGAG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242