miRBase entry: cqu-let-7

Stem-loop cqu-let-7

Accession

MI0013570

Description

Culex quinquefasciatus cqu-let-7 precursor miRNA

Literature search

1 open access papers mention cqu-let-7
(2 sentences)

Sequence

ucgcugcucccacguUGAGGUAGUUGGUUGUAUAGUauuaaaaauucaauaucuaCUAUGCAAUCCGCUAGCUUAACuugugagggcgccu
..((.((((.(((((((((.((((.((((((((((((................)))))))))))).)))).))))))..))).))))))..

Structure

uc  u    c   --      G    U            uuaaaaa 
  gc gcuc cac  guUGAG UAGU GGUUGUAUAGUa       u
  || |||| |||  |||||| |||| ||||||||||||        
  cg cggg gug  CAAUUC AUCG CUAACGUAUCau       u
uc  -    a   uu      G    C            cuauaac

Annotation confidence Not enough data

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Genome context

supercont3.4: 280595-280685 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cqu-let-7

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cqu-let-7-5p

Accession	MIMAT0014366
Description	Culex quinquefasciatus cqu-let-7-5p mature miRNA
Sequence	16 - UGAGGUAGUUGGUUGUAUAGU - 36
Evidence	experimental Illumina [1]

Mature cqu-let-7-3p

Accession	MIMAT0014367
Description	Culex quinquefasciatus cqu-let-7-3p mature miRNA
Sequence	56 - CUAUGCAAUCCGCUAGCUUAAC - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 20167119
Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
BMC Genomics (2010) 11:119