Stem-loop tcf-mir-998

Accession

MI0033248

Description

Triops cancriformis tcf-mir-998 precursor miRNA

Sequence

821 reads, 46.0 reads per million, 6 experiments

UGGAUCCAGUGGAUGGGAUGCUgggauauucacguucgauaaugcaUAGCACCACGGGAUUCAGCCGC
(((((((.((((.((..(((((.((((......)))).)....))))..)))))).))))))).....

Structure

-----       A    A  GG    ---- g    au 
     UGGAUCC GUGG UG  AUGC    U ggau  u
     ||||||| |||| ||  ||||    | ||||   
     ACUUAGG CACC AC  Uacg    a cuug  c
CGCCG       G    -  GA    uaau g    ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcf-miR-998-5p

• Accession: MIMAT0059234
• Description: Triops cancriformis tcf-miR-998-5p mature miRNA
• Sequence: 1 - UGGAUCCAGUGGAUGGGAUGCU - 22
• Evidence: experimental ; Illumina [1]

Mature tcf-miR-998-3p

• Accession: MIMAT0041416
• Description: Triops cancriformis tcf-miR-998-3p mature miRNA
• Sequence: 47 - UAGCACCACGGGAUUCAGCCGC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242