Stem-loop tcf-mir-2788

Accession

MI0033250

Description

Triops cancriformis tcf-mir-2788 precursor miRNA

Sequence

6456 reads, 320.0 reads per million, 5 experiments

UGGGGGUUCUUGUGGGCAUAUGCCaugcaauggggCAAUGCCCUGAGAAAUCCCAGA
(((((.((((((.((((((.((((.........)))))))))))))))).)))))..

Structure

--     G      U      A    aug 
  UGGGG UUCUUG GGGCAU UGCC   c
  ||||| |||||| |||||| ||||   a
  ACCCU AAGAGU CCCGUA ACgg   a
AG     A      -      -    ggu 

Annotation confidence High

Genome context

Unknown

Mature tcf-miR-2788-5p

• Accession: MIMAT0059235
• Description: Triops cancriformis tcf-miR-2788-5p mature miRNA
• Sequence: 1 - UGGGGGUUCUUGUGGGCAUAUGCC - 24
• Evidence: experimental ; Illumina [1]

Mature tcf-miR-2788-3p

• Accession: MIMAT0041419
• Description: Triops cancriformis tcf-miR-2788-3p mature miRNA
• Sequence: 36 - CAAUGCCCUGAGAAAUCCCAGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242