Stem-loop tcf-mir-193

Accession

MI0033216

Description

Triops cancriformis tcf-mir-193 precursor miRNA

Sequence

18818 reads, 829.0 reads per million, 6 experiments

AGGGACUUGGCGGAACUGUGGGuugggacuuggaccucuuaaggaagccUACUGGCCUGCUAAGUCCCAAG
.((((((((((((..(.(((((((....(((((.....)))))..))))))).)..))))))))))))...

Structure

--A            AA U       ggga     a 
   GGGACUUGGCGG  C GUGGGuu    cuugg c
   ||||||||||||  | |||||||    ||||| c
   CCCUGAAUCGUC  G CAUccga    gaauu u
GAA            CG U       --ag     c 

Annotation confidence High

Genome context

Unknown

Mature tcf-miR-193-5p

• Accession: MIMAT0059209
• Description: Triops cancriformis tcf-miR-193-5p mature miRNA
• Sequence: 1 - AGGGACUUGGCGGAACUGUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature tcf-miR-193-3p

• Accession: MIMAT0041378
• Description: Triops cancriformis tcf-miR-193-3p mature miRNA
• Sequence: 50 - UACUGGCCUGCUAAGUCCCAAG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242