Stem-loop xtr-mir-100

Accession

MI0004927

Description

Xenopus tropicalis xtr-mir-100 precursor miRNA

Literature search

3 open access papers mention xtr-mir-100
(3 sentences)

Sequence

61282 reads, 5785.0 reads per million, 4 experiments

guugccauaAACCCGUAGAUCCGAACUUGUGcugugccccucucACAAGCUCGAGUGUGCGGGUCUgugucggcuu
((((.((((.(((((((.((.(((.((((((..(.......).)))))).))).)).))))))).)))).))))..

Structure

--    c    A       G  C   A      cu ug 
  guug caua ACCCGUA AU CGA CUUGUG  g  c
  |||| |||| ||||||| || ||| ||||||  |  c
  cggc gugU UGGGCGU UG GCU GAACAc  c  c
uu    u    C       G  A   C      -u uc 

Annotation confidence High

Genome context

7: 120161035-120161110 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-100

Mature xtr-miR-100-5p

• Accession: MIMAT0003682
• Description: Xenopus tropicalis xtr-miR-100-5p mature miRNA
• Sequence: 10 - AACCCGUAGAUCCGAACUUGUG - 31
• Evidence: not_experimental

Mature xtr-miR-100-3p

• Accession: MIMAT0052162
• Description: Xenopus tropicalis xtr-miR-100-3p mature miRNA
• Sequence: 45 - ACAAGCUCGAGUGUGCGGGUCU - 66
• Evidence: not_experimental

References