Stem-loop aae-mir-125

Accession

MI0013465

Description

Aedes aegypti aae-mir-125 precursor miRNA

Literature search

1 open access papers mention aae-mir-125
(4 sentences)

Sequence

67078 reads, 3406 reads per million, 2 experiments

uuaguuuuguuucugcugauUCCCUGAGACCCUAACUUGUGAcuauaguugaaguuucacaaguuuugaucuccgguauuagcggucgagauuca
..(((((((...((((((((..((.((((.(..(((((((((((........))..)))))))))..).)))).)).)))))))).)))))))..

Structure

uu       uuu        UC  U    C CU         --  aua 
  aguuuug   cugcugau  CC GAGA C  AACUUGUGA  cu   g
  |||||||   ||||||||  || |||| |  |||||||||  ||    
  uuagagc   ggcgauua  gg cucu g  uugaacacu  ga   u
ac       --u        -u  c    a uu         uu  agu 

Annotation confidence Low

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.43: 1156595-1156689 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aae-mir-125

Mature aae-miR-125-5p

• Accession: MIMAT0014258
• Description: Aedes aegypti aae-miR-125-5p mature miRNA
• Sequence: 21 - UCCCUGAGACCCUAACUUGUGA - 42
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119