Stem-loop tcf-mir-279e

Accession

MI0033231

Description

Triops cancriformis tcf-mir-279e precursor miRNA

Sequence

1411 reads, 84.0 reads per million, 6 experiments

UGGCGAGUGGGUUUGUAGUCCacgugcaauaguuuccgUGACUAGAUCCUACACUCGUCC
.((((((((((..(.(((((.(((.((....))...)))))))).)..)).)))))))).

Structure

U        -  UU G     C   --u  a 
 GGCGAGUG GG  U UAGUC acg   gc a
 |||||||| ||  | ||||| |||   ||  
 CUGCUCAC UC  A AUCAG Ugc   ug u
C        A  CU G     -   cuu  a 

Annotation confidence High

Genome context

Unknown

Mature tcf-miR-279e-5p

• Accession: MIMAT0059221
• Description: Triops cancriformis tcf-miR-279e-5p mature miRNA
• Sequence: 1 - UGGCGAGUGGGUUUGUAGUCC - 21
• Evidence: experimental ; Illumina [1]

Mature tcf-miR-279e-3p

• Accession: MIMAT0041396
• Description: Triops cancriformis tcf-miR-279e-3p mature miRNA
• Sequence: 39 - UGACUAGAUCCUACACUCGUCC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25525151
   Identification, expression, and molecular evolution of microRNAs in the ""living fossil"" Triops cancriformis (tadpole shrimp)
   "Ikeda KT, Hirose Y, Hiraoka K, Noro E, Fujishima K, Tomita M, Kanai A"
   "RNA (2015) 21:230-242