miRBase entry: cqu-mir-100

Stem-loop cqu-mir-100

Accession

MI0013585

Description

Culex quinquefasciatus cqu-mir-100 precursor miRNA

Sequence

aacagcauuucccauuugcgggAACCCGUAGAUCCGAACUUGUGcugcccuuuuuacacguuaCAAGGCCGGAUAUAUGGGAUCcugccgauggguggaaaaagcaucga
....((.(((((((((.((((((.((((((.(((((..((((((.((...........)).))))))..))))).)))))).)))))).))))))....))).)).....

Structure

-aaca  a   ----      u      A      G     AA      c  cccu 
     gc uuu    cccauu gcgggA CCCGUA AUCCG  CUUGUG ug    u
     || |||    |||||| |||||| |||||| |||||  |||||| ||    u
     cg aaa    ggguag cgucCU GGGUAU UAGGC  GAACau gc    u
agcua  a   aggu      c      A      A     CG      u  acau

Annotation confidence Not enough data

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Genome context

supercont3.4: 271392-271501 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cqu-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cqu-miR-100-5p

Accession	MIMAT0014387
Description	Culex quinquefasciatus cqu-miR-100-5p mature miRNA
Sequence	23 - AACCCGUAGAUCCGAACUUGUG - 44
Evidence	experimental Illumina [1]

Mature cqu-miR-100-3p

Accession	MIMAT0014388
Description	Culex quinquefasciatus cqu-miR-100-3p mature miRNA
Sequence	64 - CAAGGCCGGAUAUAUGGGAUC - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 20167119
Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
BMC Genomics (2010) 11:119