Stem-loop ssc-mir-1388

Accession

MI0033392

Description

Sus scrofa ssc-mir-1388 precursor miRNA

Literature search

2 open access papers mention ssc-mir-1388
(2 sentences)

Sequence

12844 reads, 12.0 reads per million, 162 experiments

gugccuccAGGACUGUCAAACCUGAGAAUGgugagcguccagggacaAUCUCAGGUGUGUCAGCCCGAgaggugc
(((((((..((.(((.((.((((((((.((...............)).)))))))).)).))).))..)))))))

Structure

       cA  A   U  A        A  gugagc 
gugccuc  GG CUG CA ACCUGAGA UG      g
|||||||  || ||| || |||||||| ||      u
cguggag  CC GAC GU UGGACUCU ac      c
       AG  C   U  G        A  agggac 

Annotation confidence High

Genome context

chrUScaf4148: 37165-37239 [-]

Mature ssc-miR-1388-5p

• Accession: MIMAT0041590
• Description: Sus scrofa ssc-miR-1388-5p mature miRNA
• Sequence: 9 - AGGACUGUCAAACCUGAGAAUG - 30
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-1388-3p

• Accession: MIMAT0052713
• Description: Sus scrofa ssc-miR-1388-3p mature miRNA
• Sequence: 48 - AUCUCAGGUGUGUCAGCCCGA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252