Stem-loop ssc-mir-670

Accession

MI0033398

Description

Sus scrofa ssc-mir-670 precursor miRNA

Sequence

3633 reads, 7.0 reads per million, 115 experiments

cugacAUCCCUGAGUGUAUGUGGUGAACcugaauuugccuugggUUUCCUCAUAUUCAUUCAGGAGUGucag
(((((((.((((((((.((((((.((((((((.......)))))))).).))))).)))))))).)))))))

Structure

       C        U     - U        au 
cugacAU CCUGAGUG AUGUG G GAACcuga  u
||||||| |||||||| ||||| | ||||||||  u
gacuGUG GGACUUAC UAUAC C UUUggguu  g
       A        U     U C        cc 

Annotation confidence High

Genome context

chr2: 20399938-20400009 [-]

Mature ssc-miR-670-5p

• Accession: MIMAT0052716
• Description: Sus scrofa ssc-miR-670-5p mature miRNA
• Sequence: 6 - AUCCCUGAGUGUAUGUGGUGAAC - 28
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-670-3p

• Accession: MIMAT0041597
• Description: Sus scrofa ssc-miR-670-3p mature miRNA
• Sequence: 45 - UUUCCUCAUAUUCAUUCAGGAGUG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252