miRBase entry: ssc-mir-10387

Stem-loop ssc-mir-10387


Accession
MI0033400
Description
Sus scrofa ssc-mir-10387 precursor miRNA


Sequence

142 reads, 4.0 reads per million, 43 experiments
ccUGAUAGAGCUCCUGGAAGGCCUcaaguucaaccucacaaagacccccgaggcagaaauccaccAGGGCUUCCAGCACCUCCUGcagg
((((...(((...(((((((.(((....(((..((((............))))..))).......))).)))))))...)))...))))

Structure
    AUA   CUC       G   ---caag   aa    acaaa 
ccUG   GAG   CUGGAAG CCU       uuc  ccuc     g
||||   |||   ||||||| |||       |||  ||||      
ggac   CUC   GACCUUC GGA       aag  ggag     a
    GUC   CAC       G   ccaccua   ac    ccccc 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr7: 123036512-123036600 [+]

Database links

Mature ssc-miR-10387-5p

Accession MIMAT0052718
Description Sus scrofa ssc-miR-10387-5p mature miRNA
Sequence 3 - UGAUAGAGCUCCUGGAAGGCCU - 24
Evidence experimental
Illumina [1]

Mature ssc-miR-10387-3p

Accession MIMAT0041599
Description Sus scrofa ssc-miR-10387-3p mature miRNA
Sequence 66 - AGGGCUUCCAGCACCUCCUG - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252