Stem-loop ssc-mir-10388

Accession

MI0033401

Description

Sus scrofa ssc-mir-10388 precursor miRNA

Sequence

26414 reads, 17.0 reads per million, 186 experiments

CACAACUCUGGGAAGUACCAUUUagauaugcuauauugugAAUGGUGCUCCAGGGUUGU
.((((((((((..((((((((((((((((...))))).)))))))))))))))))))))

Structure

C          GA           -     g 
 ACAACUCUGG  AGUACCAUUUa gauau  
 ||||||||||  ||||||||||| ||||| c
 UGUUGGGACC  UCGUGGUAAgu uuaua  
-          --           g     u 

Annotation confidence Medium

Genome context

chrX: 53138319-53138377 [+]

Mature ssc-miR-10388-5p

• Accession: MIMAT0041600
• Description: Sus scrofa ssc-miR-10388-5p mature miRNA
• Sequence: 1 - CACAACUCUGGGAAGUACCAUUU - 23
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-10388-3p

• Accession: MIMAT0052719
• Description: Sus scrofa ssc-miR-10388-3p mature miRNA
• Sequence: 41 - AAUGGUGCUCCAGGGUUGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252