Stem-loop ssc-mir-330

Accession

MI0033402

Description

Sus scrofa ssc-mir-330 precursor miRNA

Literature search

1 open access papers mention ssc-mir-330
(1 sentences)

Sequence

523410 reads, 496.0 reads per million, 207 experiments

cugccUCUCUGGGCCUGUGUCUUAGGCUcugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGAggcag
(((((((((((((((((((.(((..((((.............)))).))))))).))))..)))))))))))

Structure

           --    -    U   AG    ugcaa 
cugccUCUCUG  GGCC UGUG CUU  GCUc     g
|||||||||||  |||| |||| |||  ||||     a
gacggAGAGAC  CCGG ACAC GAA  CGag     u
           GU    C    -   -A    ccaac 

Annotation confidence High

Genome context

chrUScaf4186: 17724-17795 [-]

Mature ssc-miR-330-5p

• Accession: MIMAT0041601
• Description: Sus scrofa ssc-miR-330-5p mature miRNA
• Sequence: 6 - UCUCUGGGCCUGUGUCUUAGGCU - 28
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-330-3p

• Accession: MIMAT0052720
• Description: Sus scrofa ssc-miR-330-3p mature miRNA
• Sequence: 45 - GCAAAGCACACGGCCUGCAGAGA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252