Stem-loop ssc-mir-200b

Accession

MI0033407

Description

Sus scrofa ssc-mir-200b precursor miRNA

Literature search

7 open access papers mention ssc-mir-200b
(35 sentences)

Sequence

12 reads, 11 reads per million, 3 experiments

ccgccaucuuacugggcagcauuggauggugucuggucucUAAUACUGCCUGGUAAUGAUGACgg
(((.(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).)))

Structure

   c    -           c      u  ug 
ccg cauc uuacugggcag auugga gg  u
||| |||| ||||||||||| |||||| ||  c
ggC GUAG AAUGGUCCGUC UAAUcu cu  u
   A    U           A      -  gg 

Annotation confidence Not enough data

Genome context

chr6: 58064306-58064370 [+]

Mature ssc-miR-200b

• Accession: MIMAT0041606
• Description: Sus scrofa ssc-miR-200b mature miRNA
• Sequence: 41 - UAAUACUGCCUGGUAAUGAUGAC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252