Stem-loop ssc-mir-200b

Accession

MI0033407

Description

Sus scrofa ssc-mir-200b precursor miRNA

Literature search

23 open access papers mention ssc-mir-200b
(61 sentences)

Sequence

5169087 reads, 2763.0 reads per million, 197 experiments

ccgcCAUCUUACUGGGCAGCAUUGGAUGGugucuggucucUAAUACUGCCUGGUAAUGAUGACgg
(((.(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).)))

Structure

   c    -           C      U  ug 
ccg CAUC UUACUGGGCAG AUUGGA GG  u
||| |||| ||||||||||| |||||| ||  c
ggC GUAG AAUGGUCCGUC UAAUcu cu  u
   A    U           A      -  gg 

Annotation confidence High

Genome context

chr6: 58064306-58064370 [+]

Mature ssc-miR-200b-5p

• Accession: MIMAT0052725
• Description: Sus scrofa ssc-miR-200b-5p mature miRNA
• Sequence: 5 - CAUCUUACUGGGCAGCAUUGGAUGG - 29
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-200b-3p

• Accession: MIMAT0041606
• Description: Sus scrofa ssc-miR-200b-3p mature miRNA
• Sequence: 41 - UAAUACUGCCUGGUAAUGAUGAC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252