Stem-loop ssc-mir-223

Accession

MI0033408

Description

Sus scrofa ssc-mir-223 precursor miRNA

Literature search

47 open access papers mention ssc-mir-223
(128 sentences)

Sequence

661939 reads, 424.0 reads per million, 202 experiments

ccacgcucCGUGUAUUUGACAAGCUGAGUUGgacacuccauguaguagagUGUCAGUUUGUCAAAUACCCCaagugcgg
((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))

Structure

  a    cC U              GAGUUG       cau 
cc cgcu  G GUAUUUGACAAGCU      gacacuc   g
|| ||||  | ||||||||||||||      |||||||   u
gg guga  C CAUAAACUGUUUGA      CUGUgag   a
  c    aC C              ------       aug 

Annotation confidence High

Genome context

chrX: 58752425-58752503 [+]

Mature ssc-miR-223-5p

• Accession: MIMAT0052726
• Description: Sus scrofa ssc-miR-223-5p mature miRNA
• Sequence: 9 - CGUGUAUUUGACAAGCUGAGUUG - 31
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-223-3p

• Accession: MIMAT0041607
• Description: Sus scrofa ssc-miR-223-3p mature miRNA
• Sequence: 51 - UGUCAGUUUGUCAAAUACCCC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252