Stem-loop ssc-mir-223

Accession

MI0033408

Description

Sus scrofa ssc-mir-223 precursor miRNA

Literature search

12 open access papers mention ssc-mir-223
(34 sentences)

Sequence

17 reads, 42 reads per million, 8 experiments

ccacgcuccguguauuugacaagcugaguuggacacuccauguaguagagUGUCAGUUUGUCAAAUACCCCaagugcgg
((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))

Structure

  a    cc u              gaguug       cau 
cc cgcu  g guauuugacaagcu      gacacuc   g
|| ||||  | ||||||||||||||      |||||||   u
gg guga  C CAUAAACUGUUUGA      CUGUgag   a
  c    aC C              ------       aug 

Annotation confidence Not enough data

Genome context

chrX: 58752425-58752503 [+]

Mature ssc-miR-223

• Accession: MIMAT0041607
• Description: Sus scrofa ssc-miR-223 mature miRNA
• Sequence: 51 - UGUCAGUUUGUCAAAUACCCC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252