Stem-loop ssc-mir-375

Accession

MI0033409

Description

Sus scrofa ssc-mir-375 precursor miRNA

Literature search

21 open access papers mention ssc-mir-375
(35 sentences)

Sequence

6438205 reads, 1962.0 reads per million, 190 experiments

cccccgccccGCGACGAGCCCCUCGCACAAACCggaccugagcguUUUGUUCGUUCGGCUCGCGUGAggcagggg
((((.(((.((((.((((((...((.(((((.((........)).))))).))...)))))))))).))).))))

Structure

    c   c    A      CCU  C     C  gac 
cccc gcc cGCG CGAGCC   CG ACAAA Cg   c
|||| ||| |||| ||||||   || ||||| ||    
gggg cgg GUGC GCUCGG   GC UGUUU gc   u
    a   A    -      CUU  U     u  gag 

Annotation confidence High

Genome context

chr15: 133957549-133957623 [+]

Mature ssc-miR-375-5p

• Accession: MIMAT0052727
• Description: Sus scrofa ssc-miR-375-5p mature miRNA
• Sequence: 11 - GCGACGAGCCCCUCGCACAAACC - 33
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-375-3p

• Accession: MIMAT0041608
• Description: Sus scrofa ssc-miR-375-3p mature miRNA
• Sequence: 46 - UUUGUUCGUUCGGCUCGCGUGA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252