Stem-loop ssc-mir-6516

Accession

MI0033411

Description

Sus scrofa ssc-mir-6516 precursor miRNA

Literature search

1 open access papers mention ssc-mir-6516
(3 sentences)

Sequence

40809 reads, 50.0 reads per million, 203 experiments

guuuugaaUUUGCAGUAACAGGUGUGAACAuucuagcagcaguuugaugAUCAUGUAUGAUACUGCAAACAaaac
((((((..(((((((((.((..(((((.((((..(((....))).)))).)))))..)).)))))))))))))))

Structure

      aa         A  GG     A    cu   a 
guuuug  UUUGCAGUA CA  UGUGA CAuu  agc g
||||||  ||||||||| ||  ||||| ||||  |||  
caaaAC  AAACGUCAU GU  GUACU guag  uug c
      --         A  AU     A    -u   a 

Annotation confidence High

Genome context

chr12: 4273963-4274037 [+]

Mature ssc-miR-6516-5p

• Accession: MIMAT0052728
• Description: Sus scrofa ssc-miR-6516-5p mature miRNA
• Sequence: 9 - UUUGCAGUAACAGGUGUGAACA - 30
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-6516-3p

• Accession: MIMAT0041610
• Description: Sus scrofa ssc-miR-6516-3p mature miRNA
• Sequence: 50 - AUCAUGUAUGAUACUGCAAACA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252