Stem-loop ssc-mir-6529

Accession

MI0033412

Description

Sus scrofa ssc-mir-6529 precursor miRNA

Sequence

375493 reads, 401.0 reads per million, 203 experiments

accuguucucuuGAGAGAUCAGAGGCGCAGAGUgcgucaaugucagugaagCCUGUGCCUUUUACCUCUUUAAgagcgcacggu
((((((.((((((((((...((((((((((...((.(((.......))).))))))))))))...))).))))))).))).)))

Structure

   -   u       -   AUC          AGU  g   au 
acc ugu cucuuGA GAG   AGAGGCGCAG   gc uca  g
||| ||| ||||||| |||   ||||||||||   || |||  u
ugg acg gagAAUU CUC   UUUCCGUGUC   Cg agu  c
   c   c       U   CAU          ---  a   ga 

Annotation confidence High

Genome context

chr13: 149441289-149441372 [+]

Mature ssc-miR-6529-5p

• Accession: MIMAT0041611
• Description: Sus scrofa ssc-miR-6529-5p mature miRNA
• Sequence: 13 - GAGAGAUCAGAGGCGCAGAGU - 33
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-6529-3p

• Accession: MIMAT0052729
• Description: Sus scrofa ssc-miR-6529-3p mature miRNA
• Sequence: 52 - CCUGUGCCUUUUACCUCUUUAA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252