Stem-loop ssc-mir-660

Accession

MI0033413

Description

Sus scrofa ssc-mir-660 precursor miRNA

Literature search

5 open access papers mention ssc-mir-660
(6 sentences)

Sequence

139024 reads, 96.0 reads per million, 186 experiments

cucccaUACCCAUUGCAUAUCGGAGUUGugaauucucaaagcACCUCCUAUGUGCAUGGUUUacaggag
((((.....((((.((((((.((((.(((...........))).)))).))))))))))......))))

Structure

    -caUAC    U      C    U   gaau 
cucc      CCAU GCAUAU GGAG UGu    u
||||      |||| |||||| |||| |||    c
gagg      GGUA CGUGUA CCUC Acg    u
    acaUUU    -      U    C   aaac 

Annotation confidence High

Genome context

chrX: 48640821-48640889 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ssc-mir-660

Mature ssc-miR-660-5p

• Accession: MIMAT0041612
• Description: Sus scrofa ssc-miR-660-5p mature miRNA
• Sequence: 7 - UACCCAUUGCAUAUCGGAGUUG - 28
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-660-3p

• Accession: MIMAT0052730
• Description: Sus scrofa ssc-miR-660-3p mature miRNA
• Sequence: 43 - ACCUCCUAUGUGCAUGGUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252