miRBase entry: dme-mir-10404

Stem-loop dme-mir-10404


Accession
MI0033427
Description
Drosophila melanogaster dme-mir-10404 precursor miRNA


Sequence

50353 reads, 2594 reads per million, 49 experiments
auacauuUAUUGAAGGAAUUGAUAUAUGCcaguaaaauggUGUAUUUUUAAUUUCUUUCAAUaaaaaca
.....(((((((((((((((((.((((((((......))))))))..)))).)))))))))))))....

Structure
auaca             -    -U        gu 
     uuUAUUGAAGGAA UUGA  AUAUGCca  a
     ||||||||||||| ||||  ||||||||   
     aaaUAACUUUCUU AAUU  UAUGUggu  a
-acaa             U    UU        aa 


Annotation confidence High
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Genome context
chrX: 23205159-23205227 [+]

Database links

Mature dme-miR-10404-5p

Accession MIMAT0041637
Description Drosophila melanogaster dme-miR-10404-5p mature miRNA
Sequence 8 - UAUUGAAGGAAUUGAUAUAUGC - 29
Evidence experimental
Illumina [1]

Mature dme-miR-10404-3p

Accession MIMAT0041638
Description Drosophila melanogaster dme-miR-10404-3p mature miRNA
Sequence 41 - UGUAUUUUUAAUUUCUUUCAAU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25605965
    A deeply conserved, noncanonical miRNA hosted by ribosomal DNA
    "Chak LL, Mohammed J, Lai EC, Tucker-Kellogg G, Okamura K"
    "RNA (2015) 21:375-384