Stem-loop emu-bantam

Accession

MI0033525

Description

Echinococcus multilocularis emu-bantam precursor miRNA

Sequence

CGGCUUUUCUCGCGUUCUGAGAgcguuaauucucuaguuaaacuaccgccuucUGAGAUCGCGAUUACAGCUGAU
(((((.(..(((((.(((.((((((((((((....)))))).....)))..))).))).)))))..).)))))..

Structure

--     U UC     U   G   --   -----      c 
  CGGCU U  UCGCG UCU AGA  gcg     uuaauu u
  ||||| |  ||||| ||| |||  |||     ||||||  
  GUCGA A  AGCGC AGA Ucu  cgc     aauuga c
UA     C UU     U   G   uc   cauca      u 

Annotation confidence Not enough data

Genome context

contig_62302: 143186-143260 [+]

Mature emu-bantam-5p

• Accession: MIMAT0041736
• Description: Echinococcus multilocularis emu-bantam-5p mature miRNA
• Sequence: 1 - CGGCUUUUCUCGCGUUCUGAGA - 22
• Evidence: experimental ; Illumina [1]

Mature emu-bantam-3p

• Accession: MIMAT0041737
• Description: Echinococcus multilocularis emu-bantam-3p mature miRNA
• Sequence: 54 - UGAGAUCGCGAUUACAGCUGAU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25659494
   High-throughput characterization of Echinococcus spp. metacestode miRNomes
   "Cucher M, Macchiaroli N, Kamenetzky L, Maldonado L, Brehm K, Rosenzvit MC"
   "Int J Parasitol (2015) 45:253-267