Stem-loop sfr-mir-10454e

Accession

MI0033564

Description

Spodoptera frugiperda sfr-mir-10454e precursor miRNA

Sequence

5213 reads, 306.0 reads per million, 42 experiments

ggggccuuagucugcuauuacaauuguguCACAAUGGUCGAUCACUGAacagugcaagagugcagugcucagugaucggccauucugaCACAAUUGUAAUAGCAGACUaagguccc
(((((((((((((((((((((((((((((((.((((((((((((((((.((.((((....)))).)).)))))))))))))))).)))))))))))))))))))))))))))))))

Structure

                               C                a  g    a 
ggggccuuagucugcuauuacaauuguguCA AAUGGUCGAUCACUGA ca ugca g
||||||||||||||||||||||||||||||| |||||||||||||||| || ||||  
cccuggaaUCAGACGAUAAUGUUAACACagu uuaccggcuagugacu gu acgu a
                               c                c  g    g 

Annotation confidence Low

Genome context

JQCY02000167.1: 42799-42914 [+]

Mature sfr-miR-10454e-5p

• Accession: MIMAT0041810
• Description: Spodoptera frugiperda sfr-miR-10454e-5p mature miRNA
• Sequence: 30 - CACAAUGGUCGAUCACUGA - 48
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-10454e-3p

• Accession: MIMAT0041811
• Description: Spodoptera frugiperda sfr-miR-10454e-3p mature miRNA
• Sequence: 89 - CACAAUUGUAAUAGCAGACU - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988