Stem-loop sfr-mir-10477

Accession

MI0033578

Description

Spodoptera frugiperda sfr-mir-10477 precursor miRNA

Sequence

2806 reads, 313.0 reads per million, 41 experiments

ggcgacggcgaccuCUCGCGCCCGGCACUGGgugcaggccauggugcggagcGAGAGGGACUGGGAUGCCa
((((.(((...((((((((..(((.((((.(((....)))..))))))).))))))))..)))...)))).

Structure

-    --a   cga        GC   G    -G   g 
 ggcg   cgg   ccuCUCGC  CCG CACU  Ggu c
 ||||   |||   ||||||||  ||| ||||  |||  
 CCGU   GUC   GGAGAGcg  ggc gugg  ccg a
a    AGG   -AG        -a   -    ua   g 

Annotation confidence Low

Genome context

JQCY02000978.1: 11976-12046 [+]

Mature sfr-miR-10477-5p

• Accession: MIMAT0041838
• Description: Spodoptera frugiperda sfr-miR-10477-5p mature miRNA
• Sequence: 15 - CUCGCGCCCGGCACUGG - 31
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-10477-3p

• Accession: MIMAT0041839
• Description: Spodoptera frugiperda sfr-miR-10477-3p mature miRNA
• Sequence: 53 - GAGAGGGACUGGGAUGCC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988