Stem-loop sfr-mir-10493

Accession

MI0033618

Description

Spodoptera frugiperda sfr-mir-10493 precursor miRNA

Sequence

439 reads, 52.0 reads per million, 41 experiments

cagaauuuuuucugauccgaaGCUGCGGACUGCCUAGCGaguaaccggggcuccgguuugaaaagcaggaguagaAACGGGGUGGUUUUUAGUcagaaagagucug
((((.(((((((((((..((((((((..(((.(((.((....((((((....))))))......)))))))).........))))))))..)))))))))))))))

Structure

    a           cc        -------GG   G   A  --Gagu      g 
caga uuuuuucugau  gaaGCUGC         ACU CCU GC      aaccgg g
|||| |||||||||||  ||||||||         ||| ||| ||      ||||||  
gucu gagaaagacUG  UUUUGGUG         uga gga cg      uuggcc c
    -           AU        GGGCAAaga   -   -  aaaagu      u 

Annotation confidence Low

Genome context

JQCY02002339.1: 25755-25860 [-]

Mature sfr-miR-10493-5p

• Accession: MIMAT0041914
• Description: Spodoptera frugiperda sfr-miR-10493-5p mature miRNA
• Sequence: 22 - GCUGCGGACUGCCUAGCG - 39
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-10493-3p

• Accession: MIMAT0041915
• Description: Spodoptera frugiperda sfr-miR-10493-3p mature miRNA
• Sequence: 76 - AACGGGGUGGUUUUUAGU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988