miRBase entry: tae-MIR10518

Stem-loop tae-MIR10518


Accession
MI0033664
Description
Triticum aestivum tae-MIR10518 precursor miRNA


Sequence

1629 reads, 22.0 reads per million, 149 experiments
uauaucuagacauagacuuuguucagauaauaguUACUCCCUCCGUUUUAAAAUAuaagagauuuugaagggaugugacacaucuagagcuagaauaugucacaaaccuuuaaaauuucUUAUAGGACGGAGGGAGUucgaguuagcuuagguauuguuuagu
.....(((((((....((..((.....((((....(((((((((((((.....((((((((((((((((((..(((((((..((((....))))...)))))))..)))))))))))))))))))))))))))))))....))))))..))....))))))).

Structure
uauau       uaga  uu  ucaga    aguU             UAAAA                  ga       -ca    g 
     cuagaca    cu  gu     uaau    ACUCCCUCCGUUU     UAuaagagauuuugaagg  ugugaca   ucua a
     |||||||    ||  ||     ||||    |||||||||||||     ||||||||||||||||||  |||||||   ||||  
     gauuugu    ga  cg     auug    UGAGGGAGGCAGG     AUAUUcuuuaaaauuucc  acacugu   agau g
----u       uaug  uu  -----    agcu             -----                  aa       aua    c 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tae-miR10518-5p

Accession MIMAT0056560
Description Triticum aestivum tae-miR10518-5p mature miRNA
Sequence 35 - UACUCCCUCCGUUUUAAAAUA - 55
Evidence experimental
unknown

Mature tae-miR10518-3p

Accession MIMAT0041987
Description Triticum aestivum tae-miR10518-3p mature miRNA
Sequence 120 - UUAUAGGACGGAGGGAGU - 137
Evidence experimental
Illumina [1], qRT-PCR [1]

References

  1. PubMed ID: 25480755
    Novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.)
    "Kumar RR, Pathak H, Sharma SK, Kala YK, Nirjal MK, Singh GP, Goswami S, Rai RD"
    "Funct Integr Genomics (2015) 15:323-348