Stem-loop sly-MIR172c

Accession

MI0033678

Description

Solanum lycopersicum sly-MIR172c precursor miRNA

Literature search

30 open access papers mention sly-MIR172c
(124 sentences)

Sequence

261321 reads, 7082.0 reads per million, 81 experiments

cagauGCAGCAUCUUCAAGAUUCACAuagauuuauauaaaauauagaguuccauguuuggggugaaaguaauuaauuaauuaauuaauuuucuccuauauauuggcucuauugauuauuauuuguugugAGAAUCUUGAUGAUGCUGCAgcggca
....(((((((((.(((((((((.(((((......((((...((((((((..((((.(((((.((((((((((((....)))))).))))))))))).)))).))))))))...))))......))))).))))))))).)))))))))......

Structure

--caga         U         A     auuuau    aau        cc    u     u      -      u 
      uGCAGCAUC UCAAGAUUC CAuag      auaa   auagaguu  augu ugggg gaaagu aauuaa u
      ||||||||| ||||||||| |||||      ||||   ||||||||  |||| ||||| |||||| ||||||  
      ACGUCGUAG AGUUCUAAG guguu      uauu   uaucucgg  uaua auccu cuuuua uuaauu a
acggcg         U         A     guuuau    agu        -u    u     -      a      a 

Annotation confidence Not enough data

Genome context

chr4: 4093786-4093940 [-]

Mature sly-miR172c-5p

• Accession: MIMAT0055742
• Description: Solanum lycopersicum sly-miR172c-5p mature miRNA
• Sequence: 6 - GCAGCAUCUUCAAGAUUCACA - 26
• Evidence: experimental ; unknown

Mature sly-miR172c-3p

• Accession: MIMAT0042004
• Description: Solanum lycopersicum sly-miR172c-3p mature miRNA
• Sequence: 130 - AGAAUCUUGAUGAUGCUGCA - 149
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195